It's interesting to see and it looks like they set everyone back at 50. I would have drained more of my dark energy capture rate if I knew that they would refill everyone to the max. As for the refills, I think it might be interesting for those people who only rent out for a few days. They can spam everyone on the final day and collect out the chests plus rewards at the end of the season.
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50 is the new 100%. And they filled it based on how much ECR you had when the switch was made, so you wouldn't get full energy afterward if your ECR was at 75%.
As long as it is profitable this can happen or even refilling every day. They will adjust prices if they think they are too low or too high.